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Dr. Sarah Chen
Stanford · Interpretability · NLP
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Nova · Professor Researcher · re-ranking top 20…
Arati Desai

Arati Desai

Verified

University of Pennsylvania · Rehabilitation Medicine

Active 2007–2024

h-index24
Citations3.6k
Papers14995 last 5y
Funding
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Research topics

  • Artificial Intelligence
  • Machine Learning
  • Cancer research
  • Medicine
  • Oncology
  • Computer Science
  • Surgery
  • Pharmacology
  • Computational biology
  • Bioinformatics
  • Genetics
  • Chemistry
  • Internal medicine
  • Biology

Selected publications

  • Intrathecal bivalent CAR T cells targeting EGFR and IL13Rα2 in recurrent glioblastoma: phase 1 trial interim results

    Nature Medicine · 2024 · 314 citations

    • Medicine
    • Oncology
    • Pharmacology
  • Clinical measures, radiomics, and genomics offer synergistic value in AI-based prediction of overall survival in patients with glioblastoma

    Scientific Reports · 2022 · 86 citations

    • Computer Science
    • Artificial Intelligence
    • Machine Learning

    Multi-omic data, i.e., clinical measures, radiomic, and genetic data, capture multi-faceted tumor characteristics, contributing to a comprehensive patient risk assessment. Here, we investigate the additive value and independent reproducibility of integrated diagnostics in prediction of overall survival (OS) in isocitrate dehydrogenase (IDH)-wildtype GBM patients, by combining conventional and deep learning methods. Conventional radiomics and deep learning features were extracted from pre-operative multi-parametric MRI of 516 GBM patients. Support vector machine (SVM) classifiers were trained on the radiomic features in the discovery cohort (n = 404) to categorize patient groups of high-risk (OS < 6 months) vs all, and low-risk (OS ≥ 18 months) vs all. The trained radiomic model was independently tested in the replication cohort (n = 112) and a patient-wise survival prediction index was produced. Multivariate Cox-PH models were generated for the replication cohort, first based on clinical measures solely, and then by layering on radiomics and molecular information. Evaluation of the high-risk and low-risk classifiers in the discovery/replication cohorts revealed area under the ROC curves (AUCs) of 0.78 (95% CI 0.70-0.85)/0.75 (95% CI 0.64-0.79) and 0.75 (95% CI 0.65-0.84)/0.63 (95% CI 0.52-0.71), respectively. Cox-PH modeling showed a concordance index of 0.65 (95% CI 0.6-0.7) for clinical data improving to 0.75 (95% CI 0.72-0.79) for the combination of all omics. This study signifies the value of integrated diagnostics for improved prediction of OS in GBM.

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